MmuEX6103308 @ mm10
Exon Skipping
Gene
ENSMUSG00000032698 | Lmo2
Description
LIM domain only 2 [Source:MGI Symbol;Acc:MGI:102811]
Coordinates
chr2:103957986-103976220:+
Coord C1 exon
chr2:103957986-103958083
Coord A exon
chr2:103970493-103970712
Coord C2 exon
chr2:103976005-103976220
Length
220 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
AAATGCATACTCTTTTCTCCTGACTTAAACTGAGTTCCTGACATTTTCTGGAAAGAAGGCATTTCTACCTGCATCTGTAGTGACGATTGGAGAGGCAG
Seq A exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
Seq C2 exon
GGAACCCGTGGATGAGGTGCTGCAGATACCCCCATCCCTGCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTGGGTGTCGGCTGGGAGAGGTGGGGAGGCGCCTCTACTACAAGCTGGGACGGAAATTGTGCAGGAGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032698_MULTIEX1-3/4=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.642 C2=0.030
Domain overlap (PFAM):
C1:
NA
A:
PF124483=Milton=FE(88.0=100)
C2:
PF124483=Milton=PD(7.9=9.6),PF0041217=LIM=PU(94.9=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATACTCTTTTCTCCTGACTT
R:
TCTCCTGCACAATTTCCGTCC
Band lengths:
300-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types