MmuALTD1028856-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000046085 | 4931422A03Rik
Description
RIKEN cDNA 4931422A03 gene [Source:MGI Symbol;Acc:MGI:1918236]
Coordinates
chr2:103966943-103977816:-
Coord C1 exon
chr2:103977749-103977816
Coord A exon
NA
Coord C2 exon
chr2:103966943-103967137
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
ACAAGTACATTCTTTTCCAGGGA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GGATGGAGGCAGGAGCCCAGCGGGAGTCATTTACCCAGCTGCTTTCTGATGGACCTGGCAGGCCTGGG
Seq A exon
NA
Seq C2 exon
GGAAGAAGAGTCCTACGTGACTATGACTACATGCCTTTGCTACAGTGGACTTCTGCTACGAGTGAAGTGTCACACGGGGAGAATGCTTACAAGGTCAATTTACTTTTGTTCTTGTTTTAATCACTGGAAGCTGAGTTGCAACATACATCTTGTTAGTTGCGATAGTCACGGAAATAAAGCTCTCTTCTAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046085-13-16,14-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCTGATGGACCTGGCAG
R:
TTCTCCCCGTGTGACACTTCA
Band lengths:
111-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types