MmuEX1016307 @ mm10
Exon Skipping
Gene
ENSMUSG00000032698 | Lmo2
Description
LIM domain only 2 [Source:MGI Symbol;Acc:MGI:102811]
Coordinates
chr2:103957986-103970712:+
Coord C1 exon
chr2:103957986-103958083
Coord A exon
chr2:103969238-103969721
Coord C2 exon
chr2:103970493-103970712
Length
484 bp
Sequences
Splice sites
3' ss Seq
GTATTTCTTTCTCCTTCTAGAAC
3' ss Score
10.99
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
Exon sequences
Seq C1 exon
AAATGCATACTCTTTTCTCCTGACTTAAACTGAGTTCCTGACATTTTCTGGAAAGAAGGCATTTCTACCTGCATCTGTAGTGACGATTGGAGAGGCAG
Seq A exon
AACTTGTCTTCAAGCTTGAAGGAGAAACCTGCCCTTTTCTTTGTTTTATATAAGACAAAATAATAGTAAGTAATAACTGAAAGTCTTTTTATCGGGAAGGAACTTCCTCCGGTCCAAGCAAGTATTGCTGCTGATACTTTACAGAGAGGGCCAGCCTCACCGCTGGAGTTCGCTCTTTGAAAGAGGCTAGGGGAGGGAATTCTGCCGCCAGCAGATGGAGAGGAGACCCGGACAACGTGGTCCCTCCCAGACACCCTCCCTGCGGGATTAGCTGCCCCCAGCTCTGCTCAGGCGCACCTAGCGCGTGAGGTTCCTGGTCACACAGCTTGCGCCCCTCTCTGGAGAGCAGTCGCAGCTACTAGCTTGCCGCCAGCAGAGCCGCACTGTCTCGGGCATCGCAGAGCACCACGACTGTGGACTTGGGACCTCGAACCCGAGACGAGCGCGCGCTAGCCAGCCATTAGCAACGCTTGCATTTCTGCAG
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032698_MULTIEX1-1/4=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.642
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124483=Milton=FE(88.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCATACTCTTTTCTCCTGACT
R:
TCAGACGGGTCCAGGCTCTT
Band lengths:
318-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types