BtaEX0020327 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006951 | LMO2
Description
Bos taurus LIM domain only 2 (rhombotin-like 1) (LMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076352]
Coordinates
chr15:65401584-65417064:-
Coord C1 exon
chr15:65417001-65417064
Coord A exon
chr15:65405854-65406085
Coord C2 exon
chr15:65401584-65401799
Length
232 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
TAACACCGACTCTGAAAAGAAGTTGTTTTTCACCCTGGACTTGAAGTAACTGGTGGAGAGGCAG
Seq A exon
GGAGCGCGGTGACTGTCCTTGAGCGCGGAGGGGCGAGCTCGCCGCCAGAGCGCCGGAGCAAGAAGAGGCGCAGGAGCGGCGGCGGCGGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGCCCCGGCAGCCGGCCAGCCCCGCGCCACAAAGGGAGCGCCCCCGCCGCCTGGCACGCCACCTCCCTCCCCAATGTCCTCGGCCATCGAGAGGAAGAGCCTGGACCCATCTGA
Seq C2 exon
GGAGCCGGTGGACGAGGTGCTGCAGATGCCCCCGTCCCTGCTGACATGCGGAGGCTGCCAGCAGAACATCGGGGACCGCTACTTCCTGAAGGCCATCGACCAGTACTGGCACGAGGACTGCCTCAGCTGTGACCTCTGCGGGTGCCGGCTGGGCGAGGTGGGCCGGCGCCTCTACTACAAGCTGGGCCGGAAGCTCTGCCGCCGAGACTATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006951_MULTIEX1-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.143 C2=0.014
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0041217=LIM=PU(94.9=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGACTCTGAAAAGAAGTTGT
R:
GAGATAGTCTCGGCGGCAGAG
Band lengths:
276-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development