RnoALTD0016725-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009401 | Lmo2
Description
LIM domain only 2 [Source:RGD Symbol;Acc:1307101]
Coordinates
chr3:93920447-93921021:+
Coord C1 exon
chr3:93920447-93920569
Coord A exon
NA
Coord C2 exon
chr3:93920802-93921021
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
3' ss Seq
TCTCTCTTTGGCGTTTGAAGGGA
3' ss Score
7.3
Exon sequences
Seq C1 exon
GGGAAGCTGAGCGAAAATAGACCTTCGCGAGAGAGGAGGGAGCCCCGGGAGAGCCGCGCGGTCCGCTCCCCGCCCCCAGGCCGCCGCCCCCTCTCTGCCCTCGGCGCCCCGACCCCAGCGAAG
Seq A exon
NA
Seq C2 exon
GGAGCGCGGTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCGGCCGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCTCCCCCCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCCTGGACCCGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009401-3-8,4-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF124483=Milton=PU(2.4=66.7)
A:
NA
C2:
PF124483=Milton=FE(88.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACCTTCGCGAGAGAGGAG
R:
CTCCCTTTGTGGCGCGTG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]