HsaEX6000480 @ hg19
Exon Skipping
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:12986]
Coordinates
chr11:3392205-3400315:-
Coord C1 exon
chr11:3400268-3400315
Coord A exon
chr11:3392807-3392933
Coord C2 exon
chr11:3392205-3392300
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTTTCTTCTTCAGACT
3' ss Score
9.48
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CGGGAGATCCAGAAGTGAAACGCCAGGCTCTCTGGAGGCCAGGAGATG
Seq A exon
ACTCTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCTCGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCGTTG
Seq C2 exon
GTCTCACTGTCTGTAAGCCAGGCCTGATCACCTGCCTGGAGCAACGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGCAGACGGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801-'0-5,'0-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.157
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
ENSP00000005082, ENSP00000344483, ENSP00000346613, ENSP00000387998, ENSP00000390663, ENSP00000414353, ENSP00000431937, ENSP00000432552, ENSP00000432720, ENSP00000433911, ENSP00000434006, ENSP00000434715, ENSP00000435093, ENSP00000435153, ENSP00000435741, ENSP00000435828, ENSP00000436384, ENSP00000437265
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAAGTGAAACGCCAGG
R:
CTGGATGTCCGTCTGCTGC
Band lengths:
138-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)