HsaEX6000480 @ hg38
Exon Skipping
Gene
ENSG00000005801 | ZNF195
Description
zinc finger protein 195 [Source:HGNC Symbol;Acc:HGNC:12986]
Coordinates
chr11:3370975-3379167:-
Coord C1 exon
chr11:3379038-3379167
Coord A exon
chr11:3371577-3371703
Coord C2 exon
chr11:3370975-3371070
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGTTTCTTCTTCAGACT
3' ss Score
9.48
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
CCTTTGTCCCGACAGAGCTCCACTTCCTGTCCCCGCGGCTCTGTGTCCCCTGCTAGCCGTAGGTCGTGTGACCCGCAGGCACCGGGAGATCCAGAAGTGAAACGCCAGGCTCTCTGGAGGCCAGGAGATG
Seq A exon
ACTCTGTTGACGTTCAGGGATGTGGCCATAGAATTCTCCCTGGAGGAGTGGAAATGCCTGGACCTCGCTCAGCAGAATTTGTACAGGGATGTGATGTTGGAGAACTACAGAAACTTGTTCTCCGTTG
Seq C2 exon
GTCTCACTGTCTGTAAGCCAGGCCTGATCACCTGCCTGGAGCAACGAAAAGAGCCCTGGAATGTGAAGAGACAGGAGGCAGCAGACGGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005801_MULTIEX2-4/4=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3),PF102634=SprT-like=PU(17.6=41.9)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF102634=SprT-like=FE(31.4=100),PF134651=zf-H2C2_2=PU(8.3=6.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSP00000005082, ENSP00000344483, ENSP00000346613, ENSP00000387998, ENSP00000390663, ENSP00000414353, ENSP00000431937, ENSP00000432552, ENSP00000432720, ENSP00000433911, ENSP00000434006, ENSP00000434715, ENSP00000435093, ENSP00000435153, ENSP00000435741, ENSP00000435828, ENSP00000436384, ENSP00000437265, ENSP00000477630, ENSP00000482411
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGTCCCGACAGAGCTC
R:
CTGGATGTCCGTCTGCTGC
Band lengths:
226-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains