HsaEX6005718 @ hg19
Exon Skipping
Gene
ENSG00000166157 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:12023]
Coordinates
chr21:10970009-10990920:-
Coord C1 exon
chr21:10990763-10990920
Coord A exon
chr21:10971292-10971345
Coord C2 exon
chr21:10970009-10970062
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGACCATATTTGTCCTTTAGTCC
3' ss Score
7.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGGCAGGGGGCGGGGCGTCTCCGAGCGGCGGGGCCAAGGGAGGGCACAACAGCTGCTACCTGAACAGTTTCTGACCCAACAGTTACCCAGCGCCGGACTCGCTGCGCCCCGGCGGCTCTAGGGACCCCCGGCGCCTACACTTAGCTCCGCGCCCGAG
Seq A exon
TCCTGATCCGACTGACCTGGCGGGAGTCATCATTGAGCTCGGCCCCAATGACAG
Seq C2 exon
TCCACAGACAAGTGAATTTAAAGGAGCAACCGAGGAGGCACCTGCGAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166157-'11-19,'11-17,16-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.211 C2=0.704
Domain overlap (PFAM):
C1:
NA
A:
PF059157=DUF872=PU(6.6=31.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCAACAGTTACCCAGC
R:
CTTTCTTTCGCAGGTGCCTCC
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)