HsaEX6005718 @ hg38
Exon Skipping
Gene
ENSG00000274391 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:HGNC:12023]
Coordinates
chr21:10538681-10559544:+
Coord C1 exon
chr21:10538681-10538734
Coord A exon
chr21:10541112-10541165
Coord C2 exon
chr21:10559497-10559544
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGACCATATTTGTCCTTTAGTCC
3' ss Score
7.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAG
Seq A exon
TCCTGATCCGACTGACCTGGCGGGAGTCATCATTGAGCTCGGCCCCAATGACAG
Seq C2 exon
CAAGATTAAGAAAATTGTGCATTCAATTGTATCATCCTTTGCATTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000274391_MULTIEX3-6/9=5-C2
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACCCACAAATGAATTATCAGGA
R:
CCAAATGCAAAGGATGATACAATTGA
Band lengths:
102-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains