HsaEX6008598 @ hg38
Exon Skipping
Gene
ENSG00000186088 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr7:77375058-77377390:-
Coord C1 exon
chr7:77377286-77377390
Coord A exon
chr7:77376848-77376907
Coord C2 exon
chr7:77375058-77375101
Length
60 bp
Sequences
Splice sites
3' ss Seq
CATTCTGTTTTCTCTTTTAGAAA
3' ss Score
12.12
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGATTAAAAATTCTGGCCATCTCCCAAGAGACAGAATAGCTGAGGATTTCGTTTGGGCTCAGTGGGATATGTCAGAACAGAGATTATATTACATTGACCTGAAG
Seq A exon
AAATCAAGGAGTATCTTAAAATGTATCCAGTTTTATGCTGATGAGAGCTATAACTTAATG
Seq C2 exon
TTTGAAGTACCCTTGGACATATCATTAAGCAACTCAGGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGCCATCTCCCAAGAG
R:
TCCTGAGTTGCTTAATGATATGTCCA
Band lengths:
134-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains