BtaEX0027173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44079437-44111276:+
Coord C1 exon
chr4:44079437-44079541
Coord A exon
chr4:44079765-44079824
Coord C2 exon
chr4:44111207-44111276
Length
60 bp
Sequences
Splice sites
3' ss Seq
TACTCTGTTTTCTCTTTTAGAAA
3' ss Score
11.58
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTAATTAAAAATTCTGGCCATCTCCCAAGAGAGAGAATAGCCGAAGATTTTGTTTGGGCTCAGTGGGATATGTCAGAGCAGAGATTATACTATATTGATCTGAAG
Seq A exon
AAATCAAGGAGTGTCTTAAAATGCATCCAGTTTTATGCTGAAGAGCACTTTAACTTAATG
Seq C2 exon
ATTATTCAGTGGATTTCTGAGAACATCTCTGCCTGCCATTCATTTGACCTCATTCAGGAATTTATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430_MULTIEX1-5/11=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGCCATCTCCCAAGAG
R:
AGGTCAAATGAATGGCAGGCA
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development