BtaEX0027172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44076218-44111276:+
Coord C1 exon
chr4:44076218-44076267
Coord A exon
chr4:44079437-44079541
Coord C2 exon
chr4:44111207-44111276
Length
105 bp
Sequences
Splice sites
3' ss Seq
AAATCTCTTTGCCTCCTTAGGTA
3' ss Score
8.8
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATATTGAACAATTTCATATCCAAGTTGTCCAAGAAGATGGAAATCGAGTG
Seq A exon
GTAATTAAAAATTCTGGCCATCTCCCAAGAGAGAGAATAGCCGAAGATTTTGTTTGGGCTCAGTGGGATATGTCAGAGCAGAGATTATACTATATTGATCTGAAG
Seq C2 exon
ATTATTCAGTGGATTTCTGAGAACATCTCTGCCTGCCATTCATTTGACCTCATTCAGGAATTTATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430_MULTIEX1-4/11=3-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAATTTCATATCCAAGTTGTCC
R:
TTCCTGAATGAGGTCAAATGAATGG
Band lengths:
106-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development