MmuEX0035217 @ mm10
Exon Skipping
Gene
ENSMUSG00000039934 | Gsap
Description
gamma-secretase activating protein [Source:MGI Symbol;Acc:MGI:2442259]
Coordinates
chr5:21221226-21228067:+
Coord C1 exon
chr5:21221226-21221295
Coord A exon
chr5:21226244-21226348
Coord C2 exon
chr5:21228024-21228067
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTAAATCATTTTGTCCCTAGGTG
3' ss Score
10.73
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTCCACAGAACCACCTGCTACTGATCTCAGAAGAGAAAT
Seq A exon
GTGATTAGAAATTCTAGCCATCTCCCAAGAGACAGACTAGCTGAAGACTTTGTTTGGGCTCAGTGGGATCTGTCAGAGCAGAGACTATACTACATTGAACTAAAG
Seq C2 exon
TTTGAAATGCCCTTGGACATAACGTTAACTGGCTTGAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039934_MULTIEX4-3/8=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCTACCCACAAGCTGAA
R:
TTAAATCTCAAGCCAGTTAACGTT
Band lengths:
114-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types