HsaEX0047674 @ hg38
Exon Skipping
Gene
ENSG00000186088 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr7:77376848-77381354:-
Coord C1 exon
chr7:77381305-77381354
Coord A exon
chr7:77377286-77377390
Coord C2 exon
chr7:77376848-77376907
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTGCATTTTTAGGTG
3' ss Score
12.22
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATATTGAACAATTTCGTATCCATGTCGCCCAAGAAGATGGAAATAGAGTG
Seq A exon
GTGATTAAAAATTCTGGCCATCTCCCAAGAGACAGAATAGCTGAGGATTTCGTTTGGGCTCAGTGGGATATGTCAGAACAGAGATTATATTACATTGACCTGAAG
Seq C2 exon
AAATCAAGGAGTATCTTAAAATGTATCCAGTTTTATGCTGATGAGAGCTATAACTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088_MULTIEX6-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000257626fB5235
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAATTTCGTATCCATGTCGC
R:
CATTAAGTTATAGCTCTCATCAGCAT
Band lengths:
106-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development