GgaEX6000476 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12496821-12501005:+
Coord C1 exon
chr1:12496821-12496867
Coord A exon
chr1:12499930-12500034
Coord C2 exon
chr1:12500946-12501005
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCTTTCCTTTTAGGTG
3' ss Score
14.47
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
ACATCGAACAATTCGATATTCACGTTGCAGAAGAGGAACACAGAGTG
Seq A exon
GTGATTCAGAACTCAGGTCAGCTTCCAAGAGCCAGAGTTGCAGATGATCTCATTTGGGCACAGTGGGATATGACAGAACAAAGACTCTTCTACATTGTTCCAAAG
Seq C2 exon
GAATCAAGGAGTATTTTAAGATGTGTCCAGTTCTACCCTGATGAAAATTTTAACTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'12-14,'12-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTCGATATTCACGTTGCAGA
R:
TGTTGAGTTAAAATTTTCATCAGGGT
Band lengths:
100-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]