GgaEX6000476 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13652303-13656487:+
Coord C1 exon
chr1:13652303-13652349
Coord A exon
chr1:13655412-13655516
Coord C2 exon
chr1:13656428-13656487
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTCTTTCCTTTTAGGTG
3' ss Score
14.47
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
Exon sequences
Seq C1 exon
ACATCGAACAATTCGATATTCACGTTGCAGAAGAGGAACACAGAGTG
Seq A exon
GTGATTCAGAACTCAGGTCAGCTTCCAAGAGCCAGAGTTGCAGATGATCTCATTTGGGCACAGTGGGATATGACAGAACAAAGACTCTTCTACATTGTTCCAAAG
Seq C2 exon
GAATCAAGGAGTATTTTAAGATGTGTCCAGTTCTACCCTGATGAAAATTTTAACTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'6-8,'6-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTCGATATTCACGTTGCAGA
R:
TGTTGAGTTAAAATTTTCATCAGGGT
Band lengths:
100-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]