BtaEX0027175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44081114-44111276:+
Coord C1 exon
chr4:44081114-44081157
Coord A exon
chr4:44082282-44082367
Coord C2 exon
chr4:44111207-44111276
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCTATCCTTTATGTTCTTAGACT
3' ss Score
7.54
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TTTGAAGCACCCTTGGATATATCATTAAGTGACTCAGGATTCAA
Seq A exon
ACTTGTCAACTTTGGATATAGTGATCTTCAAGACAAAGAGGAATTATCCGAACACCTGACCTTATGTGTTTTTACCAACCATACAG
Seq C2 exon
ATTATTCAGTGGATTTCTGAGAACATCTCTGCCTGCCATTCATTTGACCTCATTCAGGAATTTATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430_MULTIEX1-7/11=6-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGCACCCTTGGATATATCA
R:
TCCTGAATGAGGTCAAATGAATGGC
Band lengths:
103-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development