HsaEX0047668 @ hg19
Exon Skipping
Gene
ENSG00000186088 | PION
Description
pigeon homolog (Drosophila) [Source:HGNC Symbol;Acc:28042]
Coordinates
chr7:76984872-77006224:-
Coord C1 exon
chr7:77006165-77006224
Coord A exon
chr7:77003387-77003472
Coord C2 exon
chr7:76984872-76984964
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCATTCTTTATGTTCTTAGACT
3' ss Score
7.27
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAATCAAGGAGTATCTTAAAATGTATCCAGTTTTATGCTGATGAGAGCTATAACTTAATG
Seq A exon
ACTTGTCAACTTTGGATGTGATTATCATCAATACCGAGATAAATTTTCCAAACACCTGACTCTGTGTGTTTTTACCAACCATACAG
Seq C2 exon
ACTATTATGTGGCTGTTTACTTACCTGGTCATTTCTTCCACCTACTTAATGTTCAACATCCAGACCTGATCTGCCACAATCTCTTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088_MULTIEX3-2/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGTATCCAGTTTTATGCTGATGA
R:
CTGTCAGAAAGAGATTGTGGCA
Band lengths:
135-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)