GgaEX6000474 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13657157-13663388:+
Coord C1 exon
chr1:13657157-13657200
Coord A exon
chr1:13659131-13659216
Coord C2 exon
chr1:13663311-13663388
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTATTTGGTCCTAGACT
3' ss Score
6.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGGAATCACAGCTGGATATTTCTGTAAATGACAAACGAGTAAA
Seq A exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
Seq C2 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'10-12,'10-10,11-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCACAGCTGGATATTTCTGT
R:
TGGAGTATGATATTTCCCCAGGA
Band lengths:
103-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]