GgaEX6000474 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12501675-12507901:+
Coord C1 exon
chr1:12501675-12501718
Coord A exon
chr1:12503644-12503729
Coord C2 exon
chr1:12507824-12507901
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGATCTTTATTTGGTCCTAGACT
3' ss Score
6.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGGAATCACAGCTGGATATTTCTGTAAATGACAAACGAGTAAA
Seq A exon
ACTTGTGAATTTTGGATACAATGACTGTGAAGACCGAGATGTTCCACCCAAGTCTTTGAATCTTCAGGTTTTTACAAATAAAGCAG
Seq C2 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'17-21,'17-18,19-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATCACAGCTGGATATTTCTGT
R:
TGGAGTATGATATTTCCCCAGGA
Band lengths:
103-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]