BtaEX0027177 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018430 | PION
Description
Bos taurus pigeon homolog (Drosophila) (PION), mRNA. [Source:RefSeq mRNA;Acc:NM_001193061]
Coordinates
chr4:44092390-44111276:+
Coord C1 exon
chr4:44092390-44092467
Coord A exon
chr4:44093886-44093963
Coord C2 exon
chr4:44111207-44111276
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCTTGGTGTTCTCTCCACAGGGC
3' ss Score
11.51
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAAGTTTGTGTGTATGTTACTGCCCGAACTTTGACTCTTGGGAACAAATCACATATTCAGTGTTTTACTTTCATAAAG
Seq A exon
GGCACAGCAAAACCTTCACTACTACTCTTGGGAGTGTTGACTCACATGTGACAAAGGGCATAACTTTTCTCAACCTTG
Seq C2 exon
ATTATTCAGTGGATTTCTGAGAACATCTCTGCCTGCCATTCATTTGACCTCATTCAGGAATTTATAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018430_MULTIEX1-9/11=8-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTTTGTGTGTATGTTACTGCCC
R:
ATAAATTCCTGAATGAGGTCAAATGA
Band lengths:
143-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development