GgaEX0012042 @ galGal4
Exon Skipping
Gene
ENSGALG00000008312 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr1:12507824-12511821:+
Coord C1 exon
chr1:12507824-12507901
Coord A exon
chr1:12511214-12511291
Coord C2 exon
chr1:12511729-12511821
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATATATTTATTTTTCACAGGGT
3' ss Score
8.31
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
Seq A exon
GGTTTAGCAAAACTTTTACAGCTTCTCTAGAAAGACCAGAAACTCCTCAATTGAAGGAAGTGGCCTTTTTGAATCTTG
Seq C2 exon
ACTATTATGTGGCTGCTTATTTGCCTGGACAGTTCCTGCACCTCCTAAATATTCAGCATCCTGACCTGCTGTGCTACAGTTTATTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312_MULTIEX3-3/6=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000013530fB8077
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGTGTGTGTGTTGTAGT
R:
CTGTCAGAAATAAACTGTAGCACA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]