GgaEX0012042 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13663311-13667308:+
Coord C1 exon
chr1:13663311-13663388
Coord A exon
chr1:13666701-13666778
Coord C2 exon
chr1:13667216-13667308
Length
78 bp
Sequences
Splice sites
3' ss Seq
TATATATTTATTTTTCACAGGGT
3' ss Score
8.31
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GAGGACTGTGTGTGTGTTGTAGTCTTCCTTCGGATATTCCTGGGGAAATATCATACTCCATATATTTTTTACATAAAG
Seq A exon
GGTTTAGCAAAACTTTTACAGCTTCTCTAGAAAGACCAGAAACTCCTCAATTGAAGGAAGTGGCCTTTTTGAATCTTG
Seq C2 exon
ACTATTATGTGGCTGCTTATTTGCCTGGACAGTTCCTGCACCTCCTAAATATTCAGCATCCTGACCTGCTGTGCTACAGTTTATTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'13-15,'13-13,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGTGTGTGTGTTGTAGT
R:
CTGTCAGAAATAAACTGTAGCACA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]