HsaEX0047670 @ hg38
Exon Skipping
Gene
ENSG00000186088 | GSAP
Description
gamma-secretase activating protein [Source:HGNC Symbol;Acc:HGNC:28042]
Coordinates
chr7:77355555-77362660:-
Coord C1 exon
chr7:77362583-77362660
Coord A exon
chr7:77360824-77360901
Coord C2 exon
chr7:77355555-77355647
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCATATTCTCTCTTTGCAGGAC
3' ss Score
12.25
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAAGTTTGTGTGTATGTTACAGCCCGAAGTGTGCCTCTTGGGGACAAATCACATATTCAGTGTTTTACATTCATAAAG
Seq A exon
GACACAGCAAGACCTTCACCACTTCTCTTGAGAATGTTGGGTCACACATGACAAAGGGCATTACTTTTCTCAACCTTG
Seq C2 exon
ACTATTATGTGGCTGTTTACTTACCTGGTCATTTCTTCCACCTACTTAATGTTCAACATCCAGACCTGATCTGCCACAATCTCTTTCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186088-'28-36,'28-35,31-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGTGTATGTTACAGCCCG
R:
TGTCAGAAAGAGATTGTGGCAGA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development