RnoEX0040229 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10460242-10467779:-
Coord C1 exon
chr4:10467702-10467779
Coord A exon
chr4:10466089-10466166
Coord C2 exon
chr4:10460242-10460334
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCGTGCTCTGTATTTGTAGGGT
3' ss Score
8.44
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GGAGTTTGTGTGTGTGTTACAGCCCGAAGTCTGACTCTTGGAAAGAAATCACGTATTCAGTGTTTTACCTCCATAAAG
Seq A exon
GGTACAGAAAGACCTTCACCGTAGCTCCTGGAAGCACTGACTCGCAGGTCGCCAACGGCGTCACCTTTCTCAACCTTG
Seq C2 exon
GCTACTTTGTGGCTGTTTATTCCCCCTGCCGTTTCCTTCATTTACTTAACATTCGGCATCCAGACTTGATCTGCCACAGTCTGTTTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGTGTGTGTTACAGCCC
R:
TGTGAGAAACAGACTGTGGCA
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]