HsaEX6008657 @ hg19
Exon Skipping
Gene
ENSG00000135218 | CD36
Description
CD36 molecule (thrombospondin receptor) [Source:HGNC Symbol;Acc:1663]
Coordinates
chr7:80231466-80275497:+
Coord C1 exon
chr7:80231466-80231695
Coord A exon
chr7:80262513-80262678
Coord C2 exon
chr7:80275404-80275497
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTTCCTACTTAGAGA
3' ss Score
7.34
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
AACTTGTGTTAGGCATGCGTCCGAAGAGCTGGAAGGCTGAGGATGTCAATGGCTTTCAGATGTCAGGATAACCTTAAGGATAGATGAAGGGTTGAGAGCCTGTGCCTCATTTCTGAGTTCTCAGCTGCTATGCCGTGGAAATCCTGTTTACTTTCTGCATCTGCTCCTGCAAGACTCTGGAGCCAGTCTTGAGGTCCTACATCTCCGAAAGCAAGCTCTTCTAGAAGTTG
Seq A exon
AGAATTGTTTTTGCAAGCTGTTCAAGTAAGAATTAGGTCTGCCAACATTTTTAGATGGCCTGTAAAATTTACATAATGATTTGGCCATGCCCACATGAGAACTACCTACATATACAGAAGTGCTCTCTTTAATCTGTTACAAGCATGACTTCTATTAAACCTATAG
Seq C2 exon
ATAGCTTTCCAATGATTAGACGAATTGATTCTTTCTGTGACTCATCAGTTCATTTCCTGTAAAATTCATGTCTTGCTGTTGATTTGTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135218-'4-16,'4-10,8-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGAGGATGTCAATGGCTT
R:
ACAGGAAATGAACTGATGAGTCACA
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)