HsaEX6008657 @ hg38
Exon Skipping
Gene
ENSG00000135218 | CD36
Description
CD36 molecule [Source:HGNC Symbol;Acc:HGNC:1663]
Coordinates
chr7:80487686-80646181:+
Coord C1 exon
chr7:80487686-80487781
Coord A exon
chr7:80633197-80633362
Coord C2 exon
chr7:80646088-80646181
Length
166 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTTTTCCTACTTAGAGA
3' ss Score
7.34
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
CAAGGTTTCCAAGAATTACGTTGGTAGGCATTCAACTGGCATCCTCTGGAGGTAACCAGATGCCCAGCTGCTCCTGGAGGGGACATATGGAAGTGG
Seq A exon
AGAATTGTTTTTGCAAGCTGTTCAAGTAAGAATTAGGTCTGCCAACATTTTTAGATGGCCTGTAAAATTTACATAATGATTTGGCCATGCCCACATGAGAACTACCTACATATACAGAAGTGCTCTCTTTAATCTGTTACAAGCATGACTTCTATTAAACCTATAG
Seq C2 exon
ATAGCTTTCCAATGATTAGACGAATTGATTCTTTCTGTGACTCATCAGTTCATTTCCTGTAAAATTCATGTCTTGCTGTTGATTTGTGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135218_MULTIEX1-3/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTTTCCAAGAATTACGTTGGT
R:
TTCACAAATCAACAGCAAGACA
Band lengths:
186-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains