HsaEX6009308 @ hg38
Exon Skipping
Gene
ENSG00000106261 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr7:100015581-100029952:+
Coord C1 exon
chr7:100015581-100015726
Coord A exon
chr7:100024154-100024307
Coord C2 exon
chr7:100029861-100029952
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCCAACCTGTCTGTCTTCAGGTC
3' ss Score
11.68
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
ACGCTTCCGGCCTTTGTGACTCATTGTGTCTGTGTCGAGGCGTCGGGAGGGCCTAAGTCCGTGTGCGGTGCCCTTCGGCCGGCCTGAGCCCCAGAGTCAGCTCCCCTTTCTCGCCCAGCGCCCCCAGGCCGCTCCCGGGGCTCACG
Seq A exon
GTCCCAGGTCAAGTTCATGGACCTGAGATGCTCGCAAGGGGGATGGTGCCTCTGGATCCAGTTCAGGAGTCCTCGAGCTTTGACCTTCATCACGAGGCCACCCAGTCCCACTTCAAACATTCGTCTCGGAAACCCCGCCTCTTACAGTCACGAG
Seq C2 exon
CTCTTCCTGCTGCCCACATTCCTGCACCCCCTCATGAGGGTAGTCCCAGAGACCAGGCGATGGCATCTGCACTATTCACAGCGGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106261_MULTIEX1-6/9=C1-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.849 C2=0.971
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PD(1.1=1.9)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGGCCTTTGTGACTCAT
R:
TGGGAATCCGCTGTGAATAGTG
Band lengths:
234-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains