RnoEX6063723 @ rn6
Exon Skipping
Gene
ENSRNOG00000001335 | Zkscan1
Description
zinc finger with KRAB and SCAN domains 1 [Source:RGD Symbol;Acc:1560616]
Coordinates
chr12:19238150-19241883:+
Coord C1 exon
chr12:19238150-19238649
Coord A exon
chr12:19239054-19239204
Coord C2 exon
chr12:19241792-19241883
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTATCCATTTCCCCCCTCAGGTC
3' ss Score
11.46
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAACAGTGCAGAAACCAATAGAAGATAGTTGCTAGGACAGAAACTGCAGCCTGACCCTGTTGGACTCCACCTAAATGATGACTGCTGAGTCAAGGGAAGCCACGGGTCTATCCCCACAGGCTGCACAGGAGAAAGATGGTATAGTCATTGTGAAGGTAGAAGAAGAAGACGAGGAAGACCACATGTGGGGGCAGGACGCTAGCCTTCAGGAGACGCCACCACCCGACCCAGAGGTGTTCCGCCAACGGTTCAGGCGCTTCTGTTACCAGAACACTTTTGGGCCTCGAGAAGCTCTAAATCGACTAAAGGAACTTTGTCATCAGTGGCTTCGACCAGAAGTCAACACCAAGGAACAGATCTTGGAGCTGTTGGTACTGGAGCAGTTCCTGTCCATCCTGCCCAAAGAGCTGCAAGTGTGGCTGCAGGAGTACCGGCCTGACAGTGGAGAAGAGGCCGTGACTCTTCTGGAAGACTTGGAACTTGATCTGTCAGGACAGCAG
Seq A exon
GTCCCAGGTCAAGTTCATGGGCCTGAGATGCTTGCCAGGGGTGTGGTGCCTCTGGATCCAGTTCAGGAGTCCTCAAGCTTCGACCATCATGAAGCTGCCCAGTCTCATTTCAAGCATTCGTCTAGAAAGCCTCGTCTCTTATCACCCCGAG
Seq C2 exon
CTCTCCCTGCCACCCACGTTCCTGCCCCTCAGCATGAGGGGAATCCCAGAGACCAGGCGATGGCATCTGCACTATTGACCGCAGATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001335-'3-5,'3-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.843 C2=0.968
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.8=64.8)
A:
PF0202312=SCAN=PD(1.1=2.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCAGTGGCTTCGACCAG
R:
ATCGCCTGGTCTCTGGGATTC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]