HsaEX6013867 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71627608-71631128:+
Coord C1 exon
chr2:71627608-71627648
Coord A exon
chr2:71629086-71629217
Coord C2 exon
chr2:71631000-71631128
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAATTTGTTTTGAAGGAA
3' ss Score
6.82
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGCTGCTTTGGAGGCCACAGAGAATGAACCACTTAACAAG
Seq A exon
GAAACAGAAGAAATGTGTGTGATGCTTGTCTCTAATTTGCCTAATAAAGGATATTCTGTAGAAGAAGTTTATGACTTAGCAAAACCATTTGGTGGTTTAAAGGATATCTTGATTTTATCATCTCATAAAAAG
Seq C2 exon
GCATATATAGAAATAAATAGAAAAGCTGCTGAGTCTATGGTAAAATTTTATACCTGCTTCCCAGTATTGATGGATGGAAATCAACTCTCAATAAGTATGGCTCCTGAAAACATGAATATAAAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'46-45,'46-43,48-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
PF138931=RRM_5=PU(37.5=47.7)
C2:
PF138931=RRM_5=PD(58.9=76.7)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTGGAGGCCACAGAG
R:
CTTTTATATTCATGTTTTCAGGAGCC
Band lengths:
162-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)