DreEX6004464 @ danRer10
Exon Skipping
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19381483-19382018:-
Coord C1 exon
chr7:19381984-19382018
Coord A exon
chr7:19381764-19381898
Coord C2 exon
chr7:19381483-19381614
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTACCTTTTTTGACAACAGGAA
3' ss Score
7.41
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
CAGAAACAGCAGTTGCCAAGAAGGTTGTAAAGAAG
Seq A exon
GAAATACCCTGGAGAAAAAATATAGTGGAAATTACAAACCTTCCAGAGGCAGGGGTTACTGAAGAAGAACTCACCAACCTTGCTAAACCTTATGGCTTCACTGAAACTCCTGTCATAGCAATCACCCAACAAAGG
Seq C2 exon
GCCTATCTGCAGATGCCCAACACAGAGGCAGCTGAAAAAATGGTGAAGACCTTTTCTGAGACCCCAGCTAAAGTGAAAGAGAAAGAGATAACCGTAAAGATGATGATGCAACCCATTGATTTGAACTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.156 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
PF142591=RRM_6=PU(52.9=80.0)
C2:
PF142591=RRM_6=PD(44.1=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGTTGCCAAGAAGGT
R:
GTGTAGTTCAAATCAATGGGTTGCA
Band lengths:
162-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]