RnoEX0101598 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115655319-115661162:+
Coord C1 exon
chr4:115655319-115655356
Coord A exon
chr4:115657696-115657827
Coord C2 exon
chr4:115661034-115661162
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCTTAATTTGTTTTGAAGGAA
3' ss Score
7.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGCTTTGGAGGCCACAGAAAATGAACCAGTGAGCAAG
Seq A exon
GAAATGGAGGAAATGAGTGTAGTTTTTATTTCTAATTTGCCTAATAAAGGATATTCTACAGAAGAAATTTACAACTTAGCAAAACCATTTGGTGCTTTGAAGGATATTTTGGTTTTATCATCTCATAAAAAG
Seq C2 exon
GCATATATAGAAATAAACAAAAAATCTGCAGATTCTATGGTAAAGTTTTACACGTGCTTCCCAATATGCATGGATGGAAATCAGCTCTCCATAAGCATGGCTCCTGAGGATGTAGATTTAAAAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF142591=RRM_6=PU(53.7=81.8)
C2:
PF142591=RRM_6=PD(43.3=67.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTTTGGAGGCCACAGAAA
R:
CTTTTAAATCTACATCCTCAGGAGCC
Band lengths:
162-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]