HsaEX6013871 @ hg19
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:17894]
Coordinates
chr2:71623271-71626775:+
Coord C1 exon
chr2:71623271-71623321
Coord A exon
chr2:71625831-71625902
Coord C2 exon
chr2:71626689-71626775
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGCATCTTTTGTGATTTAGGGA
3' ss Score
8.55
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAAAACTGGACAAGCCAAGGCATCTGTAGCCAAAGTAAACAAATCTACAG
Seq A exon
GGAAATCAGCAAGTTCTGTAAAATCTGTGGTAACGGTAGCTGTTAAAGGTAATAAAGCTTCAATCAAAACAG
Seq C2 exon
CAAAATCTGGTGGAAAGAAGTCTCTAGAAGCCAAAAAGACTGGGAATGTCAAAAACAAAGACTCTAACAAACCTGTGACTATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'39-39,'39-37,43-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=0.120 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCAAGGCATCTGTAGC
R:
TGGTATAGTCACAGGTTTGTTAGAGT
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)