HsaEX6013871 @ hg38
Exon Skipping
Gene
ENSG00000075292 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr2:71396141-71399645:+
Coord C1 exon
chr2:71396141-71396191
Coord A exon
chr2:71398701-71398772
Coord C2 exon
chr2:71399559-71399645
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGCATCTTTTGTGATTTAGGGA
3' ss Score
8.55
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCAAAACTGGACAAGCCAAGGCATCTGTAGCCAAAGTAAACAAATCTACAG
Seq A exon
GGAAATCAGCAAGTTCTGTAAAATCTGTGGTAACGGTAGCTGTTAAAGGTAATAAAGCTTCAATCAAAACAG
Seq C2 exon
CAAAATCTGGTGGAAAGAAGTCTCTAGAAGCCAAAAAGACTGGGAATGTCAAAAACAAAGACTCTAACAAACCTGTGACTATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075292-'58-56,'58-54,62-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.120 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000264447fB8198
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCCAAGGCATCTGTAGC
R:
TGGTATAGTCACAGGTTTGTTAGAGT
Band lengths:
127-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains