HsaEX6014214 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84743579-84752862:+
Coord C1 exon
chr2:84743579-84743707
Coord A exon
chr2:84744943-84745175
Coord C2 exon
chr2:84752689-84752862
Length
233 bp
Sequences
Splice sites
3' ss Seq
TCCTCACCTATTCTTTTCAGGAG
3' ss Score
8.35
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCTTCCGTAGAGGCCAGCTGGTTGCTACGCAGCAACAGGAAACATTCCGCGCTACCGAGTACTTTCTACTCCCGACCAGGCATTGCTCTCTCTGGAGACCCTCGGCGGTGGTTGCTGTATTTTGACTTG
Seq A exon
GAGTAAGGATGACTTTTCGGGCCACAGATAGTGAATTTGACCTGACAAATATTGAAGAGTATGCCGAAAATTCTGCACTTTCAAGACTGAATAATATAAAAGCCAAACAAAGAGTGAGTTATGTGACATCCACAGAAAATGAATCTGATACACAAATCCTAACGTTTAGGCACATTACAAAAGCTCAGGAGAAGACAAGAAAACGACAGCAGCCTATAAAACTAGAGCCTTTG
Seq C2 exon
CCAGTGCTAAAAGTCTACCAAGATCATAAGCAGCCAGAATACATACATGAACAGAACCGATTTCAGTTAATGACTGCAGGAATCATTAAACGTCCAGTAAGCATAGCAAAAAAAAGTTTTGCCACATCATCTACTCAGTTTCTTGAGCATCAAGATGCTGTGAAAAAAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.017
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGTAGAGGCCAGCTGG
R:
TGCTCAAGAAACTGAGTAGATGATGT
Band lengths:
277-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)