MmuEX6004903 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73208547-73221651:-
Coord C1 exon
chr6:73221559-73221651
Coord A exon
chr6:73212436-73212671
Coord C2 exon
chr6:73208547-73208708
Length
236 bp
Sequences
Splice sites
3' ss Seq
TCTTTATCCCACTTGTGTAGGAA
3' ss Score
7.96
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAACATTTTCTCCTGGGACTAGACTTCTGTTCCCAGACCAGGTATTGCTGGGCCTCTGGAGACCCTTCGGGAACGCTGCTGTTGAACCGCTTG
Seq A exon
GAATAAGGATGGCTTTCCAAGGCACAGAGGATGAAATTGACCTGAAAAGTATTGAACACCAGGCAGAAGAAAATCCTATACTTGCCAGACTAAACAAAATAAAAGCAAAGGGAATTCTGAATTATGTGTCACTCAAAGAAAATGAACCTGAACCTCCAACCCTGGTATTTAGGCATACCACAAAAGCTCAAGAGAGGACCAGAAAGAGACAGCAGCCTGTGAAGCTGGAGCCTCTG
Seq C2 exon
CCAGTGCTAAAAGTCTACCAAGATCACAAGCAGCCCGAGTACATATATGAACAGAATCGACAGAAGCTCATGAGCTCTGGAATTCTTAAGCCATCACCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTCGAGGCCCAAGAAGCTGTGAAAAGGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'1-3,'1-1,3-3=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.513 C2=0.278
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTATTAGACGCGTTCTCAC
R:
CCTCGTAGGTTTCAACTTCACAGT
Band lengths:
221-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types