HsaEX6015955 @ hg38
Exon Skipping
Gene
ENSG00000183091 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:151617364-151619762:-
Coord C1 exon
chr2:151619451-151619762
Coord A exon
chr2:151618275-151618478
Coord C2 exon
chr2:151617364-151617468
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTTATCTGTTGATCTGCAGAAT
3' ss Score
9.34
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TACAAATACAAAGAAGCATATCGTAAACAGTTGGGTCACCACATTGGCGCCCGAGCAGTACACGATGACCCCAAGATAATGTGGTCCCTCCACATTGCCAAAGTGCAGAGTGACCGTGAGTACAAGAAAGATTTTGAGAAATACAAGACAAGGTACAGCAGCCCAGTGGACATGCTTGGTATCGTTTTGGCCAAGAAGTGTCAGACCTTGGTCAGCGATGTGGACTATAAACATCCTCTGCATGAATGGATCTGCCTGCCCGACCAGAATGACATCATTCATGCACGGAAAGCCTATGACCTCCAGAGTGAC
Seq A exon
AATTTGTATAAGTCAGACCTTGAATGGATGAAAGGCATTGGCTGGGTTCCGATTGATTCCTTGGAAGTTGTTAGGGCCAAGAGAGCTGGAGAATTACTTAGTGATACTATCTACCGTCAGCGTCCAGAAACGCTGAAATTTACCAGTATAACGGACACTCCGGAGCAGGTGCTGGCAAAAAACAATGCTTTAAACATGAATAAG
Seq C2 exon
CGCTTATATACTGAAGCCTGGGACAATGACAAGAAAACTATTCATGTCATGCCTGATACACCAGAAATCATGTTAGCCAAACTCAACCGAATAAACTACAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183091-'85-86,'85-84,86-86=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=PU(55.2=15.4)
A:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACACGATGACCCCAAG
R:
TCTTGTCATTGTCCCAGGCTT
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains