RnoEX6016809 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37748395-37762316:-
Coord C1 exon
chr3:37762113-37762316
Coord A exon
chr3:37749947-37750150
Coord C2 exon
chr3:37748395-37748499
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTTACCCGTTCCTCTTCAGAAT
3' ss Score
9.64
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
AATGTGTACAAGTCAGATCTCCAGTGGCTGAGAGGCATCGGCTGGGTCCCCATCGGGTCTCTGGATGTGGTCAAGTGCAAGAGGGCCGCAGAGATCCTGAGTGACAACGTCTACCGCCAGCCTCCAAACAAGTTCAAGTTCACCAGTGTGACTGACTCTCTGGAGCAGGTGCTGGCCAAGAGCAATGCCCTCAACATGAACAAG
Seq A exon
AATCTGTATAAGGCAGACCTTGAATGGATGAAAGGCATTGGCTGGGTTCCCATTGGCTCCTTGGAAGTTGTCAAAGCCAAGAGGGCCACAGAGATACTGAGCGACAACATCTACCGCCAGCGTCCGGACGCACTGAAGTTCACCAGTATAACTGACTCGCTGGAGCAGGTGCTGGCAAAGAACAATGCAATAAACATGAACAAG
Seq C2 exon
CGCTTGTACACTGAAGCCTGGGACAACGACAAGAAAACCATTCATGTCATGCCGGACACACCAGAAATCATGCTGGCCAAACTCAACAGGATAAACTACAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'69-75,'69-74,74-75=AN
Average complexity
A_C2
Mappability confidence:
92%=88=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
A:
PF0088013=Nebulin=PD(37.9=16.2),PF0088013=Nebulin=PU(55.2=23.5)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(57.1=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGTCAGATCTCCAGTGGC
R:
TATCCTGTTGAGTTTGGCCAGC
Band lengths:
292-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]