HsaEX6016096 @ hg19
Exon Skipping
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:9506]
Coordinates
chr2:158300359-158343946:-
Coord C1 exon
chr2:158343844-158343946
Coord A exon
chr2:158321448-158321539
Coord C2 exon
chr2:158300359-158300518
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCATCTCTTTTTAGAAG
3' ss Score
9.78
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GAGGCTGTACATTCATTTAGAGCAGAGTAGACGAAACCTCCTATTCTCTGGCTTGGGAACCAGGAGGAATCACTGACTGAGATTTGCCAACCAGACCTCTATG
Seq A exon
AAGTGAGCTCTATCACATGGTACGTTTATGAGAAGAGGAACCAGCAATGTTTCCTTCCATCTTCAACTATACTAACAAGATCCATCTGATGT
Seq C2 exon
GCTCCTGCAACACAGCAGCAATGGCAATTTGGCGGACTTCTGCGCTGGGCCAGCGTATAGCTCTTACTCCACACTCACCGGCAGCCTTACGATGGACGATAATAGAAGGATTCAAATGCTAGCAGACACGGTGGCTACTCTGCCTCGGGGACGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165-'3-8,'3-3,4-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.212
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAGGAATCACTGACTGA
R:
CCACCGTGTCTGCTAGCATTT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)