HsaEX6016096 @ hg38
Exon Skipping
Gene
ENSG00000115165 | CYTIP
Description
cytohesin 1 interacting protein [Source:HGNC Symbol;Acc:HGNC:9506]
Coordinates
chr2:157443847-157487434:-
Coord C1 exon
chr2:157487332-157487434
Coord A exon
chr2:157464936-157465027
Coord C2 exon
chr2:157443847-157444006
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCATCTCTTTTTAGAAG
3' ss Score
9.78
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GAGGCTGTACATTCATTTAGAGCAGAGTAGACGAAACCTCCTATTCTCTGGCTTGGGAACCAGGAGGAATCACTGACTGAGATTTGCCAACCAGACCTCTATG
Seq A exon
AAGTGAGCTCTATCACATGGTACGTTTATGAGAAGAGGAACCAGCAATGTTTCCTTCCATCTTCAACTATACTAACAAGATCCATCTGATGT
Seq C2 exon
GCTCCTGCAACACAGCAGCAATGGCAATTTGGCGGACTTCTGCGCTGGGCCAGCGTATAGCTCTTACTCCACACTCACCGGCAGCCTTACGATGGACGATAATAGAAGGATTCAAATGCTAGCAGACACGGTGGCTACTCTGCCTCGGGGACGAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115165_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGAGGAATCACTGACTGA
R:
CCACCGTGTCTGCTAGCATTT
Band lengths:
179-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains