HsaEX6016119 @ hg19
Exon Skipping
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:23061]
Coordinates
chr2:158872313-158962728:+
Coord C1 exon
chr2:158872313-158872398
Coord A exon
chr2:158958552-158958637
Coord C2 exon
chr2:158962611-158962728
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGACATCAATTTAAGGTG
3' ss Score
6.94
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATGTGCCTGCTTCCCCTTCAACTTCCACCATGATTGTAAGTGTCCTGAGGCCTCCCAGCCATGCTTCCTGTACAGCCTGTGGAACT
Seq A exon
GTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGATCTGACAGGAATACATATGTTGG
Seq C2 exon
AAAAAGGTTTGTTCACGTTAAAAATCCTTACTTGGATTTGATGGATGAAGACATTCTCTATCACTTGGATTTGGGAACAAAAACACACAACCTACCAGCAATGTTTGGAGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-'1-5,'1-3,2-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCCTTCAACTTCCACC
R:
ACATTGCTGGTAGGTTGTGTGT
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)