DmeEX6023554 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG6330 (FBgn0039464). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 3R:26949692..26958491. Its molecular function is described by: uridine phosphorylase activity. It is involved in the biological process described with: nucleoside metabolic process; gravitaxis; nucleotide catabolic process. 24 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: female fertile; fertile; gravitaxis defective; viable; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-24 hour embryonic stages, during early larval stages, during early pupal stages.

Coordinates

chr3R:26951775-26958491:-

Coord C1 exon

chr3R:26958208-26958491

Coord A exon

chr3R:26956520-26956589

Coord C2 exon

chr3R:26951775-26951898

Length

70 bp

Sequences

Splice sites

3' ss Seq

ACCTCGCTTTTTGTTTGCAGGCT

3' ss Score

9.56

5' ss Seq

CGAGTAAGT

5' ss Score

10.15

Exon sequences

Seq C1 exon

AGTCAGTTGGTTTCCAAACCTCGCGCAGCTCTGTTCGTCGCTCTTCTGTCCGTTTTGCCATTGCGATTTAGTATCGGAAAAGAGAGTGTGTAGAAGAGGAAGAAAGCGTTCCTGTTTGCTTCACGTGCCTACAGATAAACAAAGCAATTCAGCAATCGAAATACCAACGAGAATATCGTGACAAGGCAACGCGATATAATAATAGTGCTGCGATTTTCTTTATTTGGTGCATATCAGGCAAATTACAGCCAAGAGGCAACAACACAACACCTAGAACTCTTTAC

Seq A exon

GCTCCCACCGCAAGATGTCGCTGCTGCTCACCGGAAACAGTGCCTCCCTTTCCGAGGAGGAGCTCGACGA

Seq C2 exon

GTACTCCGATGGAACCGTCAAATTGCGCAACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTGGCCTTGGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAAG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0039464-'3-4,'3-1,4-4=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%