RnoEX0096783 @ rn6
Exon Skipping
Gene
ENSRNOG00000004972 | Upp1
Description
uridine phosphorylase 1 [Source:RGD Symbol;Acc:1305566]
Coordinates
chr14:89315690-89327369:+
Coord C1 exon
chr14:89315690-89315764
Coord A exon
chr14:89324093-89324158
Coord C2 exon
chr14:89327249-89327369
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTGTGATGTTTGTCCCCCAGGTC
3' ss Score
10.9
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
TCTTGGTGAAGTGACTCACTGGTGGGCCCTGACACTCTGGAAGTCTTCCCGAGAAGTGGACATCAGTCTCTGACA
Seq A exon
GTCCCGCTACAGTGAGAAAATGGCAGCTACAGGAACTGAAGCAAAGGACCTGGAAAACCATCACAA
Seq C2 exon
CAGTGACTGCCTCGTCCAGCTTTCAAATCCAAACATAGCCACGATGAAGGAAGACGTTCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCCGCTATGTTTGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004972-'6-6,'6-5,11-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.438 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTGACTCACTGGTGGG
R:
ATAGCGGGGAAATCGTGTGTG
Band lengths:
175-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]