GgaEX1062314 @ galGal3
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
NA
Coordinates
chr2:82222031-82225182:+
Coord C1 exon
chr2:82222031-82222050
Coord A exon
chr2:82222285-82222349
Coord C2 exon
chr2:82225065-82225182
Length
65 bp
Sequences
Splice sites
3' ss Seq
GTTTTAAAATATAATTCTAGGTC
3' ss Score
6.93
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTGGTCAACAGGAGCAGCG
Seq A exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
Seq C2 exon
AGAAAATTCTATCCATCTGTGCAACCCTCACCTGGAAAAAATGAAAGAAGACATCCTATACCATTTTGCTCTTGGGACCGGTACCCATGATTTTCCTGCACTGTTTGGAGATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-'4-1,'4-0,5-1=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]