DreEX6040087 @ danRer10
Exon Skipping
Gene
ENSDARG00000040869 | upp1
Description
uridine phosphorylase 1 [Source:ZFIN;Acc:ZDB-GENE-050306-2]
Coordinates
chr16:16303801-16304593:-
Coord C1 exon
chr16:16304502-16304593
Coord A exon
chr16:16304332-16304380
Coord C2 exon
chr16:16303801-16303912
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCTGTTGATGTGCCATTCAGGAA
3' ss Score
6.52
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
CAGCAGCAGCAACTGACCGACACCGACGATTTTTAATCAAGCAACCCTGCTAGTGGACACTAAATCAACCGGTCATAAACCACAATCACACG
Seq A exon
GAAAACAGAAAATGCCGCTGGGTGAAGAGAAAAACGGAAAATGCGACGG
Seq C2 exon
GTCAATATATGTAAACAATCCACACTTGGACTCTATGACAGATGACATTCTTTACCATTTTAACTTGGGAACATCCACTCATGATTTGCCAAAGATGTTTGGGGATGTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040869-'0-3,'0-2,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCCTGCTAGTGGACAC
R:
TCATGAGTGGATGTTCCCAAGT
Band lengths:
136-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]