BtaEX6026079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008428 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr4:7533969-7556112:-
Coord C1 exon
chr4:7556058-7556112
Coord A exon
chr4:7540837-7540901
Coord C2 exon
chr4:7533969-7534083
Length
65 bp
Sequences
Splice sites
3' ss Seq
ACTCTGCCGTCTTCTCCTAGGGT
3' ss Score
10.3
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTCTGCGCGGGGAGCCTCGGTGGCCGGAGTCCAGTTTTCGGGAATCACCCTGCCG
Seq A exon
GGTCCTGCCTCAGCTGAGGGAATGGCCTCCACCGCGGCTGAAACGGAGAAGCCGGAAGATCACAA
Seq C2 exon
TGACTTGGTGCAGCTTTGCAATCCCCACATAGCAGCAATGAAGGAAGACATCCTCTACCACTTCAGCCTCAGCACTAGCACGCACGATTTCCCAGCCATGTTTGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008428-'2-1,'2-0,4-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.867 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCGGAGTCCAGTTTTC
R:
CTTCACATCTCCAAACATGGCTG
Band lengths:
151-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]