HsaEX6008182 @ hg19
Exon Skipping
Gene
ENSG00000183696 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:12576]
Coordinates
chr7:48129847-48139384:+
Coord C1 exon
chr7:48129847-48129961
Coord A exon
chr7:48134360-48134424
Coord C2 exon
chr7:48139267-48139384
Length
65 bp
Sequences
Splice sites
3' ss Seq
CTGTGATTTTTTTTCCTTAGGGT
3' ss Score
11.35
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCTTGGTGAGGTGACTCGCGGTCGCGGGTGACTCGCCGGCAGGACACTGCCTGGAACGCCTGGAGCGCCTCCCACTGCAGACGTCTGTCCGCCTCCAGCCGCTCTCCTCTGACG
Seq A exon
GGTCCTGCCTCAGTTGGCGGAATGGCGGCCACGGGAGCCAATGCAGAGAAAGCTGAAAGTCACAA
Seq C2 exon
TGATTGCCCCGTCAGACTTTTAAATCCAAACATAGCAAAAATGAAAGAAGATATTCTCTATCATTTCAATCTCACCACTAGCAGACACAATTTCCCAGCCTTGTTTGGAGATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183696-'4-15,'4-14,5-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.417 C2=0.011
Domain overlap (PFAM):
C1:
NA
A:
PF0104815=PNP_UDP_1=PU(1.2=22.2)
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACACTGCCTGGAACG
R:
GGCTGGGAAATTGTGTCTGCT
Band lengths:
175-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)