MmuEX0050711 @ mm9
Exon Skipping
Gene
ENSMUSG00000020407 | Upp1
Description
uridine phosphorylase 1 [Source:MGI Symbol;Acc:MGI:1097668]
Coordinates
chr11:9019377-9029608:+
Coord C1 exon
chr11:9019377-9019452
Coord A exon
chr11:9025636-9025701
Coord C2 exon
chr11:9029491-9029608
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTGTGATGTTTTCCCCCTAGGTC
3' ss Score
12.74
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
GTCTTGACGAAGTGATTGACTGGTGGTCTCTGACACTCTGGAAGCCTTCTCGCGACGTGGACATCGGTCTCTGACA
Seq A exon
GTCCTCCTACAGTGAGAACATGGCAGCTACAGGAACTGAAGCAAAGGACCTTGAAAACCATCACAA
Seq C2 exon
TGACTGCTTCATCCAACTTTCAAATCCAAACATAGCAGCAATGAAGGAAGACGTGCTCTACCATTTCAACCTCAGCACTAGCACACACGATTTCCCTGCTATGTTTGGAGACGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020407_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0104815=PNP_UDP_1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTCTCTGACACTCTGG
R:
ACGTCTCCAAACATAGCAGGG
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: