HsaEX6016120 @ hg38
Exon Skipping
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:157995180-158102125:+
Coord C1 exon
chr2:157995180-157995259
Coord A exon
chr2:158015801-158015886
Coord C2 exon
chr2:158102040-158102125
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTCCACCATGGTAAGATG
3' ss Score
-0.56
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GGACTTCACCAGTGCTGCCATGCTGGCCCCAGGCTGTGAGTTGGACCCAGACCAAGAAGTGGTGAGGACAAGGCCTGAAG
Seq A exon
ATGTGCCTGCTTCCCCTTCAACTTCCACCATGATTGTAAGTGTCCTGAGGCCTCCCAGCCATGCTTCCTGTACAGCCTGTGGAACT
Seq C2 exon
GTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGATCTGACAGGAATACATATGTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-'7-19,'7-11,12-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.414 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCACCAGTGCTGCCAT
R:
ATGTATTCCTGTCAGATCTCATGGAC
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains