HsaEX6016300 @ hg19
Exon Skipping
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:HGNC Symbol;Acc:18863]
Coordinates
chr2:163374240-163393591:-
Coord C1 exon
chr2:163393435-163393591
Coord A exon
chr2:163384433-163384597
Coord C2 exon
chr2:163374240-163374668
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTGAATGGGCATTACTCAGATT
3' ss Score
0.48
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGGTCCACTTTTATTTGTAACACTCACATAATTCCAGTGAAAAACCAAGAGGGCGTGGCTATGATGTTCATCATTAATTTTGAATATGTGACGGATAATGAAAACGCTGCCACCCCAGAGAGGGTAAACCCAATATTACCAATCAAAACTGTAAACC
Seq A exon
ATTGCCTGCCAATGGTTCTTCAAGTGTGAGACCATCAGCATCACCTTGCAATGTGTTTGAAGTGCAAGTTCTTGGGCCCTACACCAGAACAACTGATTCGGAAACACAGAAATTCACCAAGCTGTGTTTTAACAAACACTTCAGGTCATTCTGATGCCCAAGAAG
Seq C2 exon
GGAAATTTTTTGGGTTCAAATTCCCTGGTCTGAGAGTTCTCACTTACAGAAAGCAGTCCTTACCACAAGAAGACCCCGATGTGGTGGTCATCGATTCATCTAAACACAGTGATGATTCAGTAGCCATGAAGCATTTTAAGTCTCCTACAAAAGAAAGCTGCAGCCCCTCTGAAGCAGATGACACAAAAGCTTTGATACAGCCCAGCAAATGTTCTCCCTTGGTGAATATATCCGGACCTCTTGACCATTCCTCTCCCAAAAGGCAATGGGACCGACTCTACCCTGACATGCTGCAGTCAAGTTCCCAGCTGTCCCATTCCAGATCAAGGGAAAGCTTATGTAGTATACGGAGAGCATCTTCGGTCCATGATATAGAAGGATTCGGCGTCCACCCCAAGAACATATTTAGAGACCGACATGCCAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-'2-5,'2-4,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.523
Domain overlap (PFAM):
C1:
PF134261=PAS_9=PD(29.0=58.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGAAAACGCTGCCACCCC
R:
GTGTCATCTGCTTCAGAGGGG
Band lengths:
246-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)